I have found a turkey baster and boiling RODI water will work most of the time. Not an exact method but cheaper than any other. I started with one mushroom, now I take about a dozen per week to the local LFS and have about 125 in my tank that I have not successfully removed yet.
One thing to note is not to kill so many at a time as it will hurt water quality.
It really does suck am working on a new tank and was originally planning to use my current rock. Now most of it is useless and I see mushrooms as equivalent to aptasia.
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Mark...
290g Peninsula Display, 425g total volume. Setup Jan 2013.
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