Well it seems like if something can go wrong with my builds it does.. No super serious, but looks like I will have to take my brand new Water Blaster HY7000 pump into to Concepts to get checked out... I fired it up this morning and it was fairly silent, after a few hours I could hear it from my office. Loud humming noise that started to get a bit of a clicking noise that you could hear in the rotation.. unplugged it at that point.
Hopefully it is a simple fix.