It has cleared up a bit and the fish are still more active than they were when I got home. The pumps and powerheads seem to be working normally - it looks the same and has the same colour on the indicator lights as usual. I guess now I'm just concerned because I still haven't seen a few of the fish and I can't find their bodies either.
The pH has gone up a little bit, to 8.7, so that's concerning too, it sounds like. I think the temperature is within range though, it's 79.2.
The skimmer cup didn't overflow into the sump as far as I saw, and I've emptied it twice in the past 3 days, so that shouldn't be it.
Thanks again for all your help everyone,
-Lauren
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