I think and correct me if I'm wrong, but the book keeper that does the book keeping for her real estate firm did the taxes These book keepers are NOT accountants.
I would guess that the money she owes is broken down into GST owing (so many new business owners/self employed people forget that it is NOT income in their pocket) and they probably disallowed a large number of the deductions she made.
The only advice that should make any difference in this situation is she should go to an accounting firm and talk to a CA or CGA and set up a tax plan.
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