Good to hear the water's cleared!
Yes, I would pull out the "spent" caulerpa. It's done, all it's going to do is decompose. As long as you leave a little bit of green stuff behind, it will recover. When I was actively pruning caulerpa in my systems, I would pull out literally about 90% of it. Due to laziness I've stopped. I wish I hadn't stopped. It is going to be a very large effort of cleaning my 75g of it (and kelp). The stuff is everywhere!!
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-- Tony
My next hobby will be flooding my basement while repeatedly banging my head against a brick wall and tearing up $100 bills. Whee!
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