When i first started reefing I added Reef Iodide for my softies and the GSP slowly died off. I don't know what else it might effect though.

The Joe's Juice seems to be working very well. Parts of the area that I applied it too have already returned to original rock and so far there has been no polyp extension on the treated areas.
I am hopeful that this will fix my mistake and am glad I didn't have to actually remove anything from the tank. If you made the same mistake, using JJ or perhaps a kalk paste should help solve your problem.